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RESTRICTION ENDONUCLEASE DpnI IN COMPLEX WITH TARGET DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 200 MM POTASSIUM SULFATE, 100 MM BETAINE, 20 % W/V PEG 3350, PH 6.8. FOR CRYOCOOLING THE CRYSTALLIZATION BUFFER WAS MIXED IN 3:1 RATIO WITH 100% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.44 64.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.518 α = 90 b = 98.411 β = 112.21 c = 83.884 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Q315 BENT MIRRORS 2010-12-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949,1.2833,1.2835 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 20 98 0.028 0.028 17.5 2.9 60190 60190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 98.4 0.3 0.3 2.4 3 4429
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 19.97 60188 60188 3032 100 0.19872 0.19872 0.19772 0.1962 0.21754 0.2179 RANDOM 51.616
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 -0.81 -0.44 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.568 r_dihedral_angle_4_deg 19.503 r_dihedral_angle_3_deg 14.768 r_dihedral_angle_1_deg 6.112 r_angle_other_deg 3.954 r_scangle_it 2.725 r_scbond_it 1.736 r_angle_refined_deg 1.24 r_mcangle_it 1.201 r_mcbond_it 0.657
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.568 r_dihedral_angle_4_deg 19.503 r_dihedral_angle_3_deg 14.768 r_dihedral_angle_1_deg 6.112 r_angle_other_deg 3.954 r_scangle_it 2.725 r_scbond_it 1.736 r_angle_refined_deg 1.24 r_mcangle_it 1.201 r_mcbond_it 0.657 r_symmetry_vdw_other 0.283 r_metal_ion_refined 0.249 r_nbd_other 0.246 r_symmetry_metal_ion_refined 0.239 r_nbd_refined 0.194 r_nbtor_refined 0.184 r_symmetry_vdw_refined 0.183 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.123 r_nbtor_other 0.109 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4036 Nucleic Acid Atoms 730 Solvent Atoms 197 Heterogen Atoms 14
Software Software Software Name Purpose ADSC data collection SHELXDE phasing DM model building ARP/wARP model building REFMAC refinement CNS refinement XDS data reduction SCALA data scaling DM phasing