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JAK1 kinase (JH1 domain) in complex with compound 20
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B7A pdb entry 2B7A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 300 PEG 6000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.37 48.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.755 α = 90 b = 173.322 β = 94.27 c = 44.595 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2010-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 50 99.8 0.069 15 3.2 32187 32187 -2 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.3 99.8 0.383 2.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2B7A 2.22 50 30234 30234 1513 99.71 0.20217 0.20217 0.20035 0.2022 0.23941 0.2386 RANDOM 40.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.53 0.74 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.659 r_dihedral_angle_4_deg 15.769 r_dihedral_angle_3_deg 12.443 r_dihedral_angle_1_deg 5.693 r_scangle_it 4.481 r_mcangle_it 3.947 r_scbond_it 3.197 r_mcbond_it 3.109 r_angle_refined_deg 1.135 r_angle_other_deg 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.659 r_dihedral_angle_4_deg 15.769 r_dihedral_angle_3_deg 12.443 r_dihedral_angle_1_deg 5.693 r_scangle_it 4.481 r_mcangle_it 3.947 r_scbond_it 3.197 r_mcbond_it 3.109 r_angle_refined_deg 1.135 r_angle_other_deg 0.829 r_mcbond_other 0.785 r_symmetry_vdw_other 0.222 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.195 r_nbd_other 0.189 r_symmetry_vdw_refined 0.184 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.155 r_nbtor_other 0.081 r_chiral_restr 0.061 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4661 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 40
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling