☰ Navigation Tabs
RabGGTase in complex with covalently bound Psoromic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 285 20mM Hepes pH7.2, 100mM NaCl, 2mM DTT, 15% PEG 3350, 0.2M Ca Acetate, 0.1M Hepes pH7.2, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.31 46.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.421 α = 90 b = 91.078 β = 90 c = 114.725 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU 2010-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.4 99.7 0.045 0.045 25.7 4.8 36057 35947 7.9 25.7 42.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 29.4 34152 1795 99.75 0.18875 0.18552 0.1919 0.25148 0.2586 RANDOM 42.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 0.47 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.205 r_dihedral_angle_3_deg 16.329 r_dihedral_angle_4_deg 15.964 r_dihedral_angle_1_deg 5.426 r_angle_other_deg 4.499 r_mcbond_other 3.807 r_scangle_it 3.102 r_mcangle_it 2.06 r_scbond_it 2.006 r_angle_refined_deg 1.409
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.205 r_dihedral_angle_3_deg 16.329 r_dihedral_angle_4_deg 15.964 r_dihedral_angle_1_deg 5.426 r_angle_other_deg 4.499 r_mcbond_other 3.807 r_scangle_it 3.102 r_mcangle_it 2.06 r_scbond_it 2.006 r_angle_refined_deg 1.409 r_mcbond_it 1.152 r_symmetry_vdw_other 0.248 r_nbd_other 0.231 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.208 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.17 r_symmetry_vdw_refined 0.149 r_nbtor_other 0.123 r_chiral_restr 0.079 r_metal_ion_refined 0.073 r_bond_refined_d 0.014 r_gen_planes_other 0.007 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5067 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 27
Software Software Software Name Purpose MAR345dtb data collection PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling