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1.9 Angstrom resolution crystal structure of Se-methionine hypothetical protein SAOUHSC_02783 from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 295 7.0 mg/mL protein in 0.25 M sodium chloride, 0.01 M Tris, pH 8.3, screen: TRAP, H1, 0.1 M HEPES, pH 7.0, 30% v/v Jeffamine, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 38.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.346 α = 90 b = 60.707 β = 90 c = 94.156 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD Beryllium lenses 2012-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 96.3 0.084 16.4 4.3 20233 19583 -3 23.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 80.3 0.438 3.1 4.1 1485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 28.89 18575 18575 1007 96.8 0.21801 0.21801 0.21533 0.2243 0.27143 0.2765 RANDOM 28.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.17 -3.52 6.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.891 r_dihedral_angle_4_deg 17.723 r_dihedral_angle_3_deg 11.564 r_scangle_it 4.309 r_dihedral_angle_1_deg 3.661 r_scbond_it 2.852 r_mcangle_it 1.632 r_angle_refined_deg 1.364 r_mcbond_it 0.977 r_angle_other_deg 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.891 r_dihedral_angle_4_deg 17.723 r_dihedral_angle_3_deg 11.564 r_scangle_it 4.309 r_dihedral_angle_1_deg 3.661 r_scbond_it 2.852 r_mcangle_it 1.632 r_angle_refined_deg 1.364 r_mcbond_it 0.977 r_angle_other_deg 0.791 r_mcbond_other 0.314 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1909 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 1
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing