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Crystal structure of hH-PGDS with water displacing inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION vapor diffusion
Crystal Properties Matthews coefficient Solvent content 2.13 42.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.612 α = 90 b = 77.876 β = 91.39 c = 52.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm OSMIC MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 98.8 0.066 39455
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 19.73 37441 1929 97.87 0.19698 0.19566 0.2042 0.22323 0.2393 RANDOM 29.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.58 -0.08 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 13.069 r_dihedral_angle_3_deg 12.334 r_dihedral_angle_1_deg 4.865 r_scangle_it 2.036 r_scbond_it 1.271 r_angle_refined_deg 1.062 r_angle_other_deg 0.828 r_mcangle_it 0.764 r_mcbond_it 0.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 13.069 r_dihedral_angle_3_deg 12.334 r_dihedral_angle_1_deg 4.865 r_scangle_it 2.036 r_scbond_it 1.271 r_angle_refined_deg 1.062 r_angle_other_deg 0.828 r_mcangle_it 0.764 r_mcbond_it 0.408 r_mcbond_other 0.091 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3209 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 99
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction