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Crystal structure of hH-PGDS with water displacing inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION vapor diffusion
Crystal Properties Matthews coefficient Solvent content 2.2 44.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.468 α = 90 b = 124.468 β = 90 c = 105.927 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm OSMIC MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 90.3 0.095 5.8 2.1 49416
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 89 0.307 2 4831
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 49166 2482 90.28 0.1919 0.1895 0.2037 0.236 0.2481 RANDOM 29.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.166 r_dihedral_angle_3_deg 13.727 r_dihedral_angle_4_deg 12.713 r_dihedral_angle_1_deg 4.885 r_scangle_it 1.684 r_scbond_it 1.039 r_angle_refined_deg 0.977 r_angle_other_deg 0.808 r_mcangle_it 0.655 r_mcbond_it 0.346
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.166 r_dihedral_angle_3_deg 13.727 r_dihedral_angle_4_deg 12.713 r_dihedral_angle_1_deg 4.885 r_scangle_it 1.684 r_scbond_it 1.039 r_angle_refined_deg 0.977 r_angle_other_deg 0.808 r_mcangle_it 0.655 r_mcbond_it 0.346 r_mcbond_other 0.068 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6544 Nucleic Acid Atoms Solvent Atoms 468 Heterogen Atoms 194
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction