☰ Navigation Tabs
The MBT repeats of human SCML2 in a complex with histone H2A peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OI1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.5 291 1.6M NH4PO4, 0.1M Tris/HCl, 1:5 molar ratio of protein:peptide, protein concentration 35 mg/ml, pH 9.5, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.2 70.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.949 α = 90 b = 69.949 β = 90 c = 169.609 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Q315 2008-07-26 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 43.97 99.9 0.111 15.5034 7.71 15321
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.72 99.95 0.98 1.05 7.92 1978
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OI1 2.58 40 13947 692 99.8 0.206 0.204 0.2061 0.245 0.2528 RANDOM 45.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.099 3.099 -6.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.749 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 15.628 r_dihedral_angle_1_deg 6.606 r_angle_refined_deg 1.463 r_angle_other_deg 0.856 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.749 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 15.628 r_dihedral_angle_1_deg 6.606 r_angle_refined_deg 1.463 r_angle_other_deg 0.856 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1703 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction