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Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA Q38A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.085M tris, 0.085M sodium acetate, 16% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.99 α = 90 b = 81.14 β = 90 c = 117.8 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2011-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 34.5 100 0.06 8.6 5.7 101622 17887 3 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 100 0.35 2.2 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 30.88 16950 898 99.83 0.18795 0.18538 0.1867 0.23617 0.1999 RANDOM 31.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.17 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.647 r_dihedral_angle_3_deg 16.299 r_dihedral_angle_4_deg 12.77 r_dihedral_angle_1_deg 7.087 r_sphericity_free 6.071 r_sphericity_bonded 5.538 r_scangle_it 4.942 r_scbond_it 3.768 r_rigid_bond_restr 2.62 r_mcangle_it 2.542
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.647 r_dihedral_angle_3_deg 16.299 r_dihedral_angle_4_deg 12.77 r_dihedral_angle_1_deg 7.087 r_sphericity_free 6.071 r_sphericity_bonded 5.538 r_scangle_it 4.942 r_scbond_it 3.768 r_rigid_bond_restr 2.62 r_mcangle_it 2.542 r_angle_refined_deg 1.895 r_mcbond_it 1.788 r_chiral_restr 0.13 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1741 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling