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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 6.5 277 MPD, pH 6.5, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.5 72.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 403.743 α = 90 b = 403.743 β = 90 c = 173.221 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.98 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.646 30 97.2 0.12 12.2 3.1 153457 153457 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.646 3.78 97.5 0.759 3.1 15255
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS 3.646 29.771 1.34 153299 153299 7637 96.99 0.1675 0.1645 0.1637 0.223 0.2211 FROM PDB ENTRY 2VQE 173.9463
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.8508 -9.8508 16.0687
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.336 f_angle_d 1.59 f_chiral_restr 0.089 f_bond_d 0.013 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19088 Nucleic Acid Atoms 32509 Solvent Atoms 416 Heterogen Atoms 291
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data collection PHENIX phasing