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cytochrome P450 BM3h-2G9 MRI sensor, no ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IJ2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 300 0.1 M sodium cacadylate, pH 5.5, 0.14 M Ca(Ac)2, 14 % PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.68 54.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.655 α = 90 b = 153.748 β = 94.82 c = 60.978 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.000 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 29.224 95.5 0.089 6.3 3.4 78209 78209
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.02 78.9 0.425 0.425 1.1 3 9429
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IJ2 1.92 29.22 77407 77407 3864 95.25 0.187 0.187 0.1849 0.1892 0.2258 0.2308 RANDOM 20.0628
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.45 1.36 -1 2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.728 r_dihedral_angle_4_deg 18.531 r_dihedral_angle_3_deg 14.977 r_dihedral_angle_1_deg 6.6 r_scangle_it 4.741 r_scbond_it 3.145 r_angle_refined_deg 1.91 r_mcangle_it 1.814 r_mcbond_it 1.058 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.728 r_dihedral_angle_4_deg 18.531 r_dihedral_angle_3_deg 14.977 r_dihedral_angle_1_deg 6.6 r_scangle_it 4.741 r_scbond_it 3.145 r_angle_refined_deg 1.91 r_mcangle_it 1.814 r_mcbond_it 1.058 r_chiral_restr 0.13 r_bond_refined_d 0.022 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7242 Nucleic Acid Atoms Solvent Atoms 568 Heterogen Atoms 86
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XSCALE data scaling MOLREP phasing