☰ Navigation Tabs
cytochrome P450 BM3h-9D7 MRI sensor, no ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DUB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 300 0.1 M sodium cacadylate, pH 5.5, 0.14 M Ca(Ac)2, 14 % PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.7 54.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.831 α = 90 b = 152.297 β = 94.58 c = 61.785 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.033 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.173 97.5 0.086 10.1 3.4 71112 71112
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 97.7 0.607 0.607 1.2 3.5 10432
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DUB 2 38.38 70896 70896 3585 97.19 0.1625 0.1625 0.1599 0.1618 0.212 0.2132 RANDOM 33.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 0.38 -0.67 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.975 r_dihedral_angle_4_deg 15.783 r_dihedral_angle_3_deg 14.739 r_dihedral_angle_1_deg 6.644 r_scangle_it 5.306 r_scbond_it 3.404 r_mcangle_it 1.994 r_angle_refined_deg 1.896 r_mcbond_it 1.157 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.975 r_dihedral_angle_4_deg 15.783 r_dihedral_angle_3_deg 14.739 r_dihedral_angle_1_deg 6.644 r_scangle_it 5.306 r_scbond_it 3.404 r_mcangle_it 1.994 r_angle_refined_deg 1.896 r_mcbond_it 1.157 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7261 Nucleic Acid Atoms Solvent Atoms 516 Heterogen Atoms 96
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XSCALE data scaling MOLREP phasing