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cytochrome P450 BM3h-8C8 MRI sensor, no ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DTZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 300 0.1 M Tris, pH 8.5, 0.2 M MgCl2, 22 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.63 53.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.754 α = 90 b = 145.661 β = 97.18 c = 63.532 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.033 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 38.465 93.8 0.056 10.3 3.4 174667 174667
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 93 0.555 0.555 1 3.3 25297
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DTZ 1.45 37.31 174394 174394 8812 93.42 0.1775 0.1775 0.1756 0.1741 0.2117 0.2095 RANDOM 17.4468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 -0.02 -0.52 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.352 r_dihedral_angle_4_deg 16.604 r_dihedral_angle_3_deg 14.06 r_dihedral_angle_1_deg 6.612 r_scangle_it 4.943 r_scbond_it 3.231 r_angle_refined_deg 2.203 r_mcangle_it 2.085 r_mcbond_it 1.372 r_chiral_restr 0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.352 r_dihedral_angle_4_deg 16.604 r_dihedral_angle_3_deg 14.06 r_dihedral_angle_1_deg 6.612 r_scangle_it 4.943 r_scbond_it 3.231 r_angle_refined_deg 2.203 r_mcangle_it 2.085 r_mcbond_it 1.372 r_chiral_restr 0.157 r_bond_refined_d 0.026 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7298 Nucleic Acid Atoms Solvent Atoms 1036 Heterogen Atoms 87
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XSCALE data scaling MOLREP phasing