X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3CWW 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1729810-13% PEG MME 5000, 100 MM HEPES PH 7.0, 4-14% TACSIMATE, 10% DIOXANE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties
Matthews coefficientSolvent content
3.9568.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 263.518α = 90
b = 263.518β = 90
c = 90.401γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287CCDADSC QUANTUM 3152010-10-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.25099.8551942
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.25095.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3CWW3.22505519455194294399.20.1780.1750.242RANDOM52.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.510.761.51-2.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.249
r_dihedral_angle_4_deg22.453
r_dihedral_angle_3_deg20.876
r_dihedral_angle_1_deg6.712
r_scangle_it3.707
r_scbond_it2.051
r_angle_refined_deg1.744
r_mcangle_it1.336
r_mcbond_it0.644
r_chiral_restr0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.249
r_dihedral_angle_4_deg22.453
r_dihedral_angle_3_deg20.876
r_dihedral_angle_1_deg6.712
r_scangle_it3.707
r_scbond_it2.051
r_angle_refined_deg1.744
r_mcangle_it1.336
r_mcbond_it0.644
r_chiral_restr0.108
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15526
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms110

Software

Software
Software NamePurpose
PHASESphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling