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Complex Structure of Abscisic Acid Receptor PYL3 with (+)-ABA in Spacegroup of I 212121 at 2.70A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KLX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 291 1.6M (NH)2SO4, 0.1M HEPES, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.47 64.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.189 α = 90 b = 89.041 β = 90 c = 206.685 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 92.4 0.077 3.9 18008 16637 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 4 0.591 3.9 724
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3KLX 2.7 50 15314 762 92.77 0.2119 0.2076 0.211 0.2903 0.2014 RANDOM 80.0378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 9.11 -9.09
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.708 r_dihedral_angle_2_deg 36.853 r_sphericity_bonded 22.814 r_dihedral_angle_3_deg 19.877 r_dihedral_angle_4_deg 16.084 r_dihedral_angle_1_deg 6.427 r_rigid_bond_restr 3.46 r_angle_refined_deg 1.786 r_chiral_restr 0.169 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.708 r_dihedral_angle_2_deg 36.853 r_sphericity_bonded 22.814 r_dihedral_angle_3_deg 19.877 r_dihedral_angle_4_deg 16.084 r_dihedral_angle_1_deg 6.427 r_rigid_bond_restr 3.46 r_angle_refined_deg 1.786 r_chiral_restr 0.169 r_bond_refined_d 0.008 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2509 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 38
Software Software Software Name Purpose ADSC data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling