☰ Navigation Tabs
EVALUATION OF SYNTHETIC FK506 ANALOGS AS LIGANDS FOR FKBP51 AND FKBP52: COMPLEX OF FKBP51 WITH (1R)-3-(3,4-dimethoxyphenyl)-1-phenylpropyl (2S)-1-{[(1R,2S)-2-ethyl-1-hydroxycyclohexyl](oxo)acetyl}piperidine-2-carboxylate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 37.5 % PEG3350, 0.1 M NH4OAc, 0.1 M HEPES pH 7.5, 10 % DMSO, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.19 α = 90 b = 54.785 β = 90 c = 56.735 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.099 33.427 99.7 0.067 0.067 10.3 3.5 54139 54139 6.06
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.16 98.7 0.353 0.353 2.2 3.4 7710
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION isomorphous apo crystals THROUGHOUT 3O5Q 1.1 20 51517 51373 2699 99.72 0.1489 0.1489 0.1477 0.1725 0.1829 RANDOM 9.4608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.03 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.331 r_dihedral_angle_3_deg 11.947 r_dihedral_angle_4_deg 11.313 r_dihedral_angle_1_deg 7.3 r_sphericity_free 6.421 r_scangle_it 3.633 r_sphericity_bonded 2.856 r_scbond_it 2.784 r_mcangle_it 1.976 r_mcbond_it 1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.331 r_dihedral_angle_3_deg 11.947 r_dihedral_angle_4_deg 11.313 r_dihedral_angle_1_deg 7.3 r_sphericity_free 6.421 r_scangle_it 3.633 r_sphericity_bonded 2.856 r_scbond_it 2.784 r_mcangle_it 1.976 r_mcbond_it 1.62 r_angle_refined_deg 1.613 r_rigid_bond_restr 1.291 r_angle_other_deg 0.893 r_mcbond_other 0.563 r_symmetry_hbond_refined 0.201 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.198 r_symmetry_vdw_other 0.198 r_nbd_refined 0.19 r_nbtor_refined 0.176 r_chiral_restr 0.102 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.095 r_bond_refined_d 0.013 r_bond_other_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 986 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 41
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling