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EVALUATION OF SYNTHETIC FK506 ANALOGS AS LIGANDS FOR FKBP51 AND FKBP52: COMPLEX OF FKBP51 WITH {3-[(1R)-3-(3,4-dimethoxyphenyl)-1-({[(2S)-1-{[(1S,2R)-2-ethyl-1-hydroxycyclohexyl](oxo)acetyl}piperidin-2-yl]carbonyl}oxy)propyl]phenoxy}acetic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 37.5 % PEG3350, 0.1 M NH4OAc, 0.1 M HEPES pH 7.5, 10 % DMSO, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.63 53.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.27 α = 90 b = 52.537 β = 90 c = 57.018 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.900 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.069 25.057 95.2 0.045 0.045 13.2 3.7 62752 62752 8.05
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.07 1.13 91.4 0.576 0.576 1.4 3.7 8686
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3O5Q 1.069 20 62690 59549 3141 94.93 0.1557 0.1557 0.1548 0.1636 0.1724 0.1816 RANDOM 13.5351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.32 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.465 r_dihedral_angle_4_deg 12.197 r_dihedral_angle_3_deg 9.711 r_dihedral_angle_1_deg 7.18 r_sphericity_free 5.866 r_scangle_it 3.352 r_sphericity_bonded 3.12 r_scbond_it 2.56 r_mcangle_it 1.802 r_angle_refined_deg 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.465 r_dihedral_angle_4_deg 12.197 r_dihedral_angle_3_deg 9.711 r_dihedral_angle_1_deg 7.18 r_sphericity_free 5.866 r_scangle_it 3.352 r_sphericity_bonded 3.12 r_scbond_it 2.56 r_mcangle_it 1.802 r_angle_refined_deg 1.6 r_mcbond_it 1.416 r_rigid_bond_restr 1.38 r_angle_other_deg 0.856 r_mcbond_other 0.543 r_symmetry_vdw_refined 0.343 r_symmetry_vdw_other 0.286 r_nbd_refined 0.233 r_nbd_other 0.206 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.182 r_symmetry_hbond_refined 0.098 r_nbtor_other 0.097 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 980 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 46
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling