☰ Navigation Tabs
Crystal Structure of apo(G16C/L38C) HIV-1 Protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 50mM Citrate phosphate buffer pH 5.0, 7% DMSO, 27-35% Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.472 α = 90 b = 58.168 β = 90 c = 61.043 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-03-03 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 97.9 0.098 8.1 5.7 5552
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 98.9 0.46 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.79 42.11 4535 220 97.86 0.20056 0.19767 0.1999 0.26174 0.2689 RANDOM 26.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.34 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.504 r_dihedral_angle_3_deg 16.653 r_dihedral_angle_4_deg 14.374 r_dihedral_angle_1_deg 6.303 r_scangle_it 3.144 r_scbond_it 1.795 r_angle_refined_deg 1.387 r_mcangle_it 1.254 r_angle_other_deg 0.821 r_mcbond_it 0.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.504 r_dihedral_angle_3_deg 16.653 r_dihedral_angle_4_deg 14.374 r_dihedral_angle_1_deg 6.303 r_scangle_it 3.144 r_scbond_it 1.795 r_angle_refined_deg 1.387 r_mcangle_it 1.254 r_angle_other_deg 0.821 r_mcbond_it 0.654 r_mcbond_other 0.098 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_bond_other_d 0.007 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1456 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction