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Crystal Structure of wild-type HIV-1 Protease in Complex with MKP97
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 295 126mM Phosphate buffer, 63mM Sodium Citrate, 24-29% Ammonium Sulfate, pH 6.2, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.728 α = 90 b = 57.85 β = 90 c = 61.692 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-07-15 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 97.9 0.056 14.8 6.4 26519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 85.6 0.346 3.8 2283
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 39.18 26380 1319 97.65 0.1715 0.1701 0.1824 0.1964 0.203 RANDOM 22.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.01 0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.277 r_dihedral_angle_4_deg 15.868 r_dihedral_angle_3_deg 10.966 r_dihedral_angle_1_deg 6.014 r_scangle_it 2.561 r_scbond_it 1.639 r_angle_refined_deg 1.393 r_mcangle_it 1.011 r_angle_other_deg 0.83 r_mcbond_it 0.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.277 r_dihedral_angle_4_deg 15.868 r_dihedral_angle_3_deg 10.966 r_dihedral_angle_1_deg 6.014 r_scangle_it 2.561 r_scbond_it 1.639 r_angle_refined_deg 1.393 r_mcangle_it 1.011 r_angle_other_deg 0.83 r_mcbond_it 0.589 r_mcbond_other 0.169 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1502 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 55
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing