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Crystal Structure of wild-type HIV-1 Protease in Complex with MKP56
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 295 126mM Phosphate buffer, 63mM Sodium Citrate, 24-29% Ammonium Sulfate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.732 α = 90 b = 57.763 β = 90 c = 61.736 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2011-05-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 98.7 0.043 16.6 6.8 17839
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.84 97.7 0.227 6.6 1721
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 39.2 17747 904 98.35 0.1626 0.1597 0.1727 0.2166 0.2279 RANDOM 28.6079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 0.08 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.679 r_dihedral_angle_4_deg 22.13 r_dihedral_angle_3_deg 13.287 r_dihedral_angle_1_deg 5.838 r_scangle_it 2.559 r_scbond_it 1.617 r_angle_refined_deg 1.31 r_mcangle_it 0.941 r_angle_other_deg 0.792 r_mcbond_it 0.541
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.679 r_dihedral_angle_4_deg 22.13 r_dihedral_angle_3_deg 13.287 r_dihedral_angle_1_deg 5.838 r_scangle_it 2.559 r_scbond_it 1.617 r_angle_refined_deg 1.31 r_mcangle_it 0.941 r_angle_other_deg 0.792 r_mcbond_it 0.541 r_mcbond_other 0.175 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1514 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing