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Structure of the hemagglutinin complexed with 6SLN from a highly pathogenic H7N7 influenza virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 298 20 % PEG 8000 and 1 M lithium chloride, microbatch under oil, temperature 298K, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 3.54 65.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 203.774 α = 90 b = 117.603 β = 124.15 c = 120.456 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.9 0.067 3.8 58241 54989 23.7 3.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.9 0.369 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 48.23 96681 54988 2934 99.89 0.19251 0.19016 0.1895 0.23494 0.2332 RANDOM 56.449
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.2 0.07 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.835 r_dihedral_angle_3_deg 20.709 r_dihedral_angle_4_deg 17.014 r_scangle_it 9.292 r_dihedral_angle_1_deg 8.329 r_scbond_it 5.483 r_mcangle_it 3.83 r_mcbond_it 2.328 r_angle_refined_deg 1.863 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.835 r_dihedral_angle_3_deg 20.709 r_dihedral_angle_4_deg 17.014 r_scangle_it 9.292 r_dihedral_angle_1_deg 8.329 r_scbond_it 5.483 r_mcangle_it 3.83 r_mcbond_it 2.328 r_angle_refined_deg 1.863 r_chiral_restr 0.132 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11407 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 228
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling