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Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 2 - low Mn)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 298 PEG 3000, sodium acetate, pH 7.4, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.16 42.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.387 α = 90 b = 98.264 β = 97.67 c = 100.39 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.85, 1.72, 0.979 APS 21-ID-D
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 29.74 143082 7190 97.94 0.1949 0.1935 0.2211 0.2419 RANDOM 27.4244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.02 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.499 r_dihedral_angle_4_deg 14.861 r_dihedral_angle_3_deg 13.119 r_dihedral_angle_1_deg 4.798 r_scangle_it 4.109 r_scbond_it 2.438 r_mcangle_it 1.467 r_angle_refined_deg 1.238 r_mcbond_it 0.775 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.499 r_dihedral_angle_4_deg 14.861 r_dihedral_angle_3_deg 13.119 r_dihedral_angle_1_deg 4.798 r_scangle_it 4.109 r_scbond_it 2.438 r_mcangle_it 1.467 r_angle_refined_deg 1.238 r_mcbond_it 0.775 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10806 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction