☰ Navigation Tabs
Metallosphera sedula Vps4 crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.8 40% (W/V) POLYETHYLENE GLYCOL 200 (PEG200) 100 MM TRIS-HCL BUFFER (PH 8.8)
Crystal Properties Matthews coefficient Solvent content 2.15 42.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.269 α = 90 b = 65.269 β = 90 c = 112.521 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2013-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 56.5 99.7 0.06 16.7 4.1 12935 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.7 0.63 2.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 56.52 10038 565 99.63 0.20971 0.20665 0.2114 0.26283 0.2623 RANDOM 55.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.33 0.66 -2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.621 r_dihedral_angle_3_deg 16.628 r_dihedral_angle_4_deg 10.494 r_long_range_B_refined 9.434 r_long_range_B_other 9.434 r_scangle_other 7.2 r_dihedral_angle_1_deg 5.806 r_mcangle_it 5.63 r_mcangle_other 5.63 r_scbond_it 4.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.621 r_dihedral_angle_3_deg 16.628 r_dihedral_angle_4_deg 10.494 r_long_range_B_refined 9.434 r_long_range_B_other 9.434 r_scangle_other 7.2 r_dihedral_angle_1_deg 5.806 r_mcangle_it 5.63 r_mcangle_other 5.63 r_scbond_it 4.646 r_scbond_other 4.644 r_mcbond_it 3.867 r_mcbond_other 3.857 r_angle_refined_deg 1.572 r_angle_other_deg 0.83 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2111 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing