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Understanding bi-specificity of A-domains
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AMU PDB ENTRY 1AMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 24-30% POLYETHYLENE GLYCOL 3350 0.1 M MES OR BIS-TRIS PH 5.5 - 6.
Crystal Properties Matthews coefficient Solvent content 2 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.166 α = 90 b = 82.242 β = 90 c = 90.064 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 82.2 100 0.12 13.4 6.5 30246 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 100 0.66 3.1 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AMU 2.1 20 28651 1541 99.85 0.18013 0.1778 0.1861 0.22346 0.2313 RANDOM 30.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.68 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.143 r_dihedral_angle_4_deg 16.781 r_dihedral_angle_3_deg 14.938 r_dihedral_angle_1_deg 6.691 r_mcangle_it 3.893 r_angle_other_deg 3.599 r_scbond_it 3.297 r_mcbond_it 2.665 r_mcbond_other 2.664 r_angle_refined_deg 1.955
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.143 r_dihedral_angle_4_deg 16.781 r_dihedral_angle_3_deg 14.938 r_dihedral_angle_1_deg 6.691 r_mcangle_it 3.893 r_angle_other_deg 3.599 r_scbond_it 3.297 r_mcbond_it 2.665 r_mcbond_other 2.664 r_angle_refined_deg 1.955 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_other 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3808 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing