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Crystal structure of the kinase domain of CIPK24/SOS2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CZT PDB ENTRY 4CZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20 MM TRIS PH 7.0 AND 22% PEG 4K.
Crystal Properties Matthews coefficient Solvent content 2.13 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.111 α = 104.85 b = 71.353 β = 100.32 c = 77.834 γ = 118.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 70.2 91 0.27 5.3 3.7 15242 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.6 92 1.21 1.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4CZT 3.3 70.23 15242 810 90.8 0.2712 0.2706 0.2745 0.28312 0.2842 RANDOM 70.668
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.12 -1.52 -2.01 1.24 -2.3 3.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.933 r_dihedral_angle_3_deg 20.823 r_dihedral_angle_4_deg 18.758 r_dihedral_angle_1_deg 5.629 r_mcangle_it 2.046 r_angle_refined_deg 1.126 r_mcbond_it 1.105 r_scbond_it 0.76 r_chiral_restr 0.073 r_bond_refined_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.933 r_dihedral_angle_3_deg 20.823 r_dihedral_angle_4_deg 18.758 r_dihedral_angle_1_deg 5.629 r_mcangle_it 2.046 r_angle_refined_deg 1.126 r_mcbond_it 1.105 r_scbond_it 0.76 r_chiral_restr 0.073 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8821 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing