4D1Q

Hermes transposase bound to its terminal inverted repeat


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.53 UL OF THE HERMES 79-612/L16-1T COMPLEX AT 8 MG/ML PROTEIN WAS MIXED WITH 1 UL WELL SOLUTION CONSISTING OF 0.18 M KCL, 5 MM DTT, 0.8 M K, NA TARTRATE, 0.1 M MES PH 6.5, AND 5% (V/V) T-BUTANOL.
Crystal Properties
Matthews coefficientSolvent content
6.160

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 265.15α = 90
b = 265.15β = 90
c = 157.64γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95RIGAKU IMAGING PLATEMULTILAYER MIRRORS2011-02-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.33098.70.1812.5413.1394693-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUTNONE3.4308691587099.30.21180.21180.2543RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.96-1.963.92
RMS Deviations
KeyRefinement Restraint Deviation
c_angle_deg2
c_bond_d0.016
c_bond_d_na
c_bond_d_prot
c_angle_d
c_angle_d_na
c_angle_d_prot
c_angle_deg_na
c_angle_deg_prot
c_dihedral_angle_d
RMS Deviations
KeyRefinement Restraint Deviation
c_angle_deg2
c_bond_d0.016
c_bond_d_na
c_bond_d_prot
c_angle_d
c_angle_d_na
c_angle_d_prot
c_angle_deg_na
c_angle_deg_prot
c_dihedral_angle_d
c_dihedral_angle_d_na
c_dihedral_angle_d_prot
c_improper_angle_d
c_improper_angle_d_na
c_improper_angle_d_prot
c_mcbond_it
c_mcangle_it
c_scbond_it
c_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16209
Nucleic Acid Atoms2524
Solvent Atoms
Heterogen Atoms4

Software

Software
Software NamePurpose
XDSdata reduction
XDSdata scaling
SHARPphasing
DMphasing
CNSrefinement