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Structure of the A_mallard_Sweden_51_2002 H10 Avian Haemmaglutinin in complex with human receptor analog 6-SLN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CYV PDB ENTRY 4CYV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 18% PEG 2000MME AND 0.1 M BICINE PH 9.0
Crystal Properties Matthews coefficient Solvent content 3.45 64.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.973 α = 90 b = 215.446 β = 104.91 c = 79.363 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 48.85 99.1 0.07 11.8 3.6 67905 1.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66 99.8 0.69 1.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4CYV 2.6 107.72 64439 3428 99.06 0.21067 0.20834 0.25402 0.227 RANDOM 60.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 -1.06 -2.07 3.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.789 r_dihedral_angle_3_deg 14.645 r_dihedral_angle_4_deg 12.533 r_dihedral_angle_1_deg 5.485 r_mcangle_it 1.362 r_angle_refined_deg 1.008 r_scbond_it 0.889 r_mcbond_it 0.774 r_mcbond_other 0.774 r_angle_other_deg 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.789 r_dihedral_angle_3_deg 14.645 r_dihedral_angle_4_deg 12.533 r_dihedral_angle_1_deg 5.485 r_mcangle_it 1.362 r_angle_refined_deg 1.008 r_scbond_it 0.889 r_mcbond_it 0.774 r_mcbond_other 0.774 r_angle_other_deg 0.72 r_chiral_restr 0.071 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11427 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 393
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing