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Methylmercury chloride derivative structure of the lytic CHAPK domain of the endolysin LysK from Staphylococcus aureus bacteriophage K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 25 MM TRIS-HCL, 22%(W/V) PEG 8000, 0.1 M 4-(2- HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID (HEPES)-NAOH PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.3 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.02 α = 91.8 b = 61.52 β = 98.73 c = 72.8 γ = 90.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M HORIZONTAL AND VERTICAL FOCUSSING MIRRORS AND SLITS 2013-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 71.92 64.7 0.06 11.8 3.4 48498 14.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.78 10.4 0.62 1.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.69 61.5 46067 2431 64.75 0.18291 0.18074 0.1904 0.22407 0.2314 RANDOM 22.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.72 0.09 0.84 -1.47 0.22 1.82
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.899 r_mcangle_it 2.458 r_scbond_it 1.835 r_mcbond_other 1.477 r_mcbond_it 1.476 r_angle_refined_deg 1.445 r_angle_other_deg 1.032 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.254 r_metal_ion_refined 0.236
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.899 r_mcangle_it 2.458 r_scbond_it 1.835 r_mcbond_other 1.477 r_mcbond_it 1.476 r_angle_refined_deg 1.445 r_angle_other_deg 1.032 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.254 r_metal_ion_refined 0.236 r_symmetry_hbond_refined 0.215 r_symmetry_vdw_other 0.197 r_nbtor_refined 0.183 r_nbd_other 0.178 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.133 r_nbtor_other 0.083 r_xyhbond_nbd_other 0.052 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_symmetry_hbond_other 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5208 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling autoSHARP phasing