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Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other NON-PUBLISHED
Crystallization Crystal Properties Matthews coefficient Solvent content 2.71 54.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.14 α = 90 b = 86.47 β = 90 c = 46.52 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2013-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 22.46 98.8 0.09 6.8 12 22089
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 98.8 0.33 2.5 12.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NON-PUBLISHED 1.8 22.46 20967 1107 98.47 0.17593 0.17428 0.20633 0.2068 RANDOM 16.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.35 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.409 r_dihedral_angle_4_deg 19.063 r_dihedral_angle_3_deg 13.817 r_dihedral_angle_1_deg 7.168 r_scbond_it 2.534 r_mcangle_it 1.826 r_mcbond_it 1.253 r_mcbond_other 1.203 r_angle_refined_deg 0.633 r_angle_other_deg 0.518
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.409 r_dihedral_angle_4_deg 19.063 r_dihedral_angle_3_deg 13.817 r_dihedral_angle_1_deg 7.168 r_scbond_it 2.534 r_mcangle_it 1.826 r_mcbond_it 1.253 r_mcbond_other 1.203 r_angle_refined_deg 0.633 r_angle_other_deg 0.518 r_chiral_restr 0.09 r_bond_refined_d 0.025 r_bond_other_d 0.005 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1512 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling REFMAC phasing