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Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other NON-PUBLISHED
Crystallization Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.86 α = 90 b = 85.74 β = 90 c = 46.46 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2013-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 27.67 86.4 0.13 6.6 3.3 8947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.58 88.5 0.31 2.9 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NON-PUBLISHED 2.45 27.67 7230 410 85.39 0.17913 0.17447 0.1741 0.26062 0.2606 RANDOM 20.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.59 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.379 r_dihedral_angle_4_deg 24.257 r_dihedral_angle_3_deg 14.848 r_dihedral_angle_1_deg 7.611 r_scangle_it 4.861 r_scbond_it 2.951 r_mcangle_it 1.529 r_mcbond_it 0.789 r_angle_refined_deg 0.577 r_chiral_restr 0.045
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.379 r_dihedral_angle_4_deg 24.257 r_dihedral_angle_3_deg 14.848 r_dihedral_angle_1_deg 7.611 r_scangle_it 4.861 r_scbond_it 2.951 r_mcangle_it 1.529 r_mcbond_it 0.789 r_angle_refined_deg 0.577 r_chiral_restr 0.045 r_bond_refined_d 0.002 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1512 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling REFMAC phasing