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Crystal structure of truncated human CRMP-4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4B91 PDB ENTRY 4B91
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 30% (W/V) PEG 3350, 100 MM NA TARTRATE, 100 MM BIS-TRIS PROPANE 6.5
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.4 α = 90 b = 89.62 β = 101.4 c = 133.1 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2012-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 31.21 96.5 0.17 4.8 2.5 75030 -3 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.45 93.5 0.54 1.4 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4B91 2.4 30.99 71230 3774 96.03 0.19092 0.18904 0.1945 0.22581 0.2295 RANDOM 19.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 1.15 -1.08 1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.909 r_dihedral_angle_3_deg 14.517 r_dihedral_angle_4_deg 14.068 r_dihedral_angle_1_deg 5.877 r_mcangle_it 1.546 r_angle_refined_deg 1.507 r_angle_other_deg 1.182 r_scbond_it 1.148 r_mcbond_other 0.929 r_mcbond_it 0.928
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.909 r_dihedral_angle_3_deg 14.517 r_dihedral_angle_4_deg 14.068 r_dihedral_angle_1_deg 5.877 r_mcangle_it 1.546 r_angle_refined_deg 1.507 r_angle_other_deg 1.182 r_scbond_it 1.148 r_mcbond_other 0.929 r_mcbond_it 0.928 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14706 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing