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Crystal structure of the N-terminal domain of the PA subunit of Dhori virus polymerase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20MG/ML PROTEIN, 3.2 M NA FORMATE AND 0.1 M HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.55 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.91 α = 90 b = 87.45 β = 112.98 c = 56.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 96.6 0.06 14.8 3.41 92519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 94.2 0.37 4.3 3.45
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.3 51.68 87879 4640 96.74 0.17509 0.1728 0.21964 0.1597 RANDOM 10.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.1 0.17 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.868 r_sphericity_free 24.785 r_dihedral_angle_4_deg 15.065 r_dihedral_angle_3_deg 11.986 r_sphericity_bonded 7.205 r_dihedral_angle_1_deg 6.08 r_rigid_bond_restr 5.607 r_angle_refined_deg 1.928 r_angle_other_deg 1.041 r_chiral_restr 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.868 r_sphericity_free 24.785 r_dihedral_angle_4_deg 15.065 r_dihedral_angle_3_deg 11.986 r_sphericity_bonded 7.205 r_dihedral_angle_1_deg 6.08 r_rigid_bond_restr 5.607 r_angle_refined_deg 1.928 r_angle_other_deg 1.041 r_chiral_restr 0.121 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2768 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing