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Esterase LpEst1 from Lactobacillus plantarum WCFS1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1 M SODIUM MALONATE, 0.5 % (V/V) JEFFAMINE ED-2001, 100 MM HEPES PH 7.0, 5 MM DTT
Crystal Properties Matthews coefficient Solvent content 4.44 72.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.34 α = 90 b = 168.34 β = 90 c = 184.2 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 47 100 0.11 25.8 13.9 75273 47.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 100 0.59 4.9 13.1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 2.65 53.234 1.34 74240 3736 99.97 0.1508 0.1491 0.1508 0.1825 0.1839 23.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.196 f_angle_d 1.049 f_chiral_restr 0.076 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10417 Nucleic Acid Atoms Solvent Atoms 823 Heterogen Atoms 102
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHENIX phasing