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Crystal structure of Mouse Hepatitis virus strain S Hemagglutinin- esterase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CL5 PDB ENTRY 3CL5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.6 0.2 M KH2PO4, 0.2 M SODIUM MALONATE, 15% (W/V) PEG3350 AND 5% (W/V) GLYCEROL, pH 3.6
Crystal Properties Matthews coefficient Solvent content 3 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.83 α = 90 b = 108.76 β = 90 c = 125.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2007-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.5 0.1 12.9 7.4 73858 2.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.22 96.8 0.7 2.9 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CL5 2.1 29.76 70075 3707 99.62 0.18765 0.18603 0.1926 0.21873 0.2229 RANDOM 45.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.06 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_4_deg 22.001 r_dihedral_angle_3_deg 13.688 r_dihedral_angle_1_deg 6.334 r_scangle_it 3.635 r_scbond_it 2.038 r_angle_refined_deg 1.243 r_mcangle_it 0.957 r_angle_other_deg 0.823 r_mcbond_it 0.501
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_4_deg 22.001 r_dihedral_angle_3_deg 13.688 r_dihedral_angle_1_deg 6.334 r_scangle_it 3.635 r_scbond_it 2.038 r_angle_refined_deg 1.243 r_mcangle_it 0.957 r_angle_other_deg 0.823 r_mcbond_it 0.501 r_mcbond_other 0.111 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5608 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 421
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing