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Selective Inhibitors of PDE2, PDE9, and PDE10: Modulators of Activity of the Central Nervous System
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z1L PDB ENTRY 1Z1L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.6 14% PEG 3350, 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS HYDROCHLORIDE PH 8.6
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.05 α = 110.16 b = 81.81 β = 95.66 c = 93.34 γ = 93.21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2008-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 18.47 94.1 0.1 7.1 2 47638 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.48 91.5 0.31 2 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Z1L 2.4 18.47 45148 2434 93.99 0.22801 0.22489 0.2316 0.2866 0.2916 RANDOM 29.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.42 -1.88 -0.59 -0.42 0.06 -2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.641 r_dihedral_angle_4_deg 14.314 r_dihedral_angle_3_deg 14.294 r_dihedral_angle_1_deg 4.802 r_mcangle_it 1.437 r_angle_refined_deg 0.907 r_mcbond_it 0.82 r_mcbond_other 0.82 r_angle_other_deg 0.721 r_scbond_it 0.711
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.641 r_dihedral_angle_4_deg 14.314 r_dihedral_angle_3_deg 14.294 r_dihedral_angle_1_deg 4.802 r_mcangle_it 1.437 r_angle_refined_deg 0.907 r_mcbond_it 0.82 r_mcbond_other 0.82 r_angle_other_deg 0.721 r_scbond_it 0.711 r_chiral_restr 0.05 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10334 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing