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Crystal structure of human ACVR1 (ALK2) in complex with FKBP12.6 and dorsomorphin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C9H PDB ENTRIES 1C9H AND 3H9R experimental model PDB 3H9R PDB ENTRIES 1C9H AND 3H9R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 1.8M AMMONIUM CITRATE, pH 7.2
Crystal Properties Matthews coefficient Solvent content 5.11 75.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.33 α = 90 b = 182.33 β = 90 c = 182.33 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 40 99.9 0.17 8 9 169113 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.23 100 1.07 2 9.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1C9H AND 3H9R 2.17 39.82 52159 2787 99.75 0.17833 0.17729 0.19754 0.1842 RANDOM 36.836
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.919 r_dihedral_angle_4_deg 19.435 r_dihedral_angle_3_deg 13.796 r_scbond_it 6.838 r_mcangle_it 6.552 r_dihedral_angle_1_deg 6.349 r_mcbond_other 4.707 r_mcbond_it 4.706 r_angle_refined_deg 1.767 r_angle_other_deg 0.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.919 r_dihedral_angle_4_deg 19.435 r_dihedral_angle_3_deg 13.796 r_scbond_it 6.838 r_mcangle_it 6.552 r_dihedral_angle_1_deg 6.349 r_mcbond_other 4.707 r_mcbond_it 4.706 r_angle_refined_deg 1.767 r_angle_other_deg 0.777 r_chiral_restr 0.157 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3271 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 179
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing