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Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EMN PDB ENTRY 3EMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 100 MM TRISHCL (PH=8.0), 100 MM KCL, AND PEG 2000 IN A RANGE OF 19-24%, 0.011% N-UNDECYL-BETA-D-THIOMALTOPYRANOSIDE
Crystal Properties Matthews coefficient Solvent content 2.17 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.47 α = 90 b = 72.47 β = 90 c = 177.95 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 51.29 98 0.08 13 3.56 13686 2 70.86
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3EMN 2.801 51.286 2 13684 1369 97.98 0.2492 0.2455 0.2523 0.2822 0.2875 50.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.316 f_angle_d 0.871 f_chiral_restr 0.062 f_bond_d 0.004 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2119 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 12
Software Software Software Name Purpose PHENIX refinement PHENIX phasing