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P4 PROTEIN FROM BACTERIOPHAGE PHI12 S292A MUTANT IN COMPLEX WITH AMPcPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W44 PDB ENTRY 1W44
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 10% PEG 1500 IN 100 MM SODIUM ACETATE PH 4.8 AND 5MM AMCPP
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.352 α = 90 b = 131.727 β = 90 c = 159.285 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 93.1 0.11 17.6 9.6 40589 4.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 20 70.7 0.29 4.2 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W44 2.4 38.46 34261 1844 83.42 0.26402 0.26269 0.2624 0.28977 0.2877 RANDOM 38.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 1.63 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.718 r_dihedral_angle_4_deg 16.454 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 5.213 r_mcangle_it 1.274 r_angle_refined_deg 0.951 r_angle_other_deg 0.725 r_mcbond_it 0.684 r_mcbond_other 0.684 r_scbond_it 0.471
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.718 r_dihedral_angle_4_deg 16.454 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 5.213 r_mcangle_it 1.274 r_angle_refined_deg 0.951 r_angle_other_deg 0.725 r_mcbond_it 0.684 r_mcbond_other 0.684 r_scbond_it 0.471 r_chiral_restr 0.052 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6877 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing