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Globin-like protein Glb-12 from C.elegans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 2 M AMMONIUM SULFATE, 0.2 M NA-ACETATE, 0.1 M NA-ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.44 α = 90 b = 50.44 β = 90 c = 245.27 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-01-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 29.85 99.8 0.06 13.9 6.8 23429 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 100 0.56 3.2 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.65 43.68 22130 1197 99.3 0.1811 0.17827 0.1779 0.23414 0.2282 RANDOM 26.487
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.491 r_dihedral_angle_4_deg 21.49 r_dihedral_angle_3_deg 15.382 r_sphericity_free 7.975 r_sphericity_bonded 7.218 r_scangle_it 5.501 r_dihedral_angle_1_deg 5.285 r_scbond_it 3.676 r_mcangle_it 2.676 r_rigid_bond_restr 2.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.491 r_dihedral_angle_4_deg 21.49 r_dihedral_angle_3_deg 15.382 r_sphericity_free 7.975 r_sphericity_bonded 7.218 r_scangle_it 5.501 r_dihedral_angle_1_deg 5.285 r_scbond_it 3.676 r_mcangle_it 2.676 r_rigid_bond_restr 2.227 r_angle_refined_deg 1.641 r_mcbond_it 1.64 r_chiral_restr 0.146 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1503 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing