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H5 (VN1194) Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M HEPES PH 7.0, 0.05 M MGCL2, 28-30% PEG 550
Crystal Properties Matthews coefficient Solvent content 3.97 69.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.403 α = 90 b = 101.403 β = 90 c = 449.997 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 40.9 100 0.1 15.3 9 25658 3.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.82 99.8 0.62 3.1 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.68 40.94 24350 1307 99.9 0.20433 0.20207 0.2037 0.24806 0.2451 RANDOM 75.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.32 2.32 2.32 -7.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_4_deg 14.03 r_dihedral_angle_1_deg 5.653 r_scbond_it 1.836 r_mcangle_it 1.67 r_angle_refined_deg 1.143 r_mcbond_it 0.991 r_mcbond_other 0.99 r_angle_other_deg 0.716
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_4_deg 14.03 r_dihedral_angle_1_deg 5.653 r_scbond_it 1.836 r_mcangle_it 1.67 r_angle_refined_deg 1.143 r_mcbond_it 0.991 r_mcbond_other 0.99 r_angle_other_deg 0.716 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3859 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 145
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing