☰ Navigation Tabs
Structure of CDK9 in complex with cyclin T and a 2-amino-4-heteroaryl- pyrimidine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 277 CRYSTALS WERE GROWN AT 4C USING 10-16% PEG 1000, 100MM NAK-PHOSPHATE PH 6.2, 500MM NACL, 4MM TCEP AS THE PRECIPITANT SOLUTION. THEY WERE SUBSEQUENTLY SOAKED IN THE PRESENCE OF COMPOUND.
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.11 α = 90 b = 174.11 β = 90 c = 99.261 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.97 60.04 99.3 0.06 8.61 3.63 20202
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.27 99.5 0.59 1.29 3.68
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 3.1 37.428 20201 1024 99.292 0.18 0.1777 0.176 0.2213 0.2188 110.632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.036 -4.036 -4.036 13.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.551 r_dihedral_angle_4_deg 16.85 r_dihedral_angle_3_deg 15.486 r_mcangle_it 13.678 r_scangle_it 12.045 r_scbond_it 7.943 r_mcbond_it 6.644 r_dihedral_angle_1_deg 4.964 r_mcbond_other 1.688 r_angle_refined_deg 1.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.551 r_dihedral_angle_4_deg 16.85 r_dihedral_angle_3_deg 15.486 r_mcangle_it 13.678 r_scangle_it 12.045 r_scbond_it 7.943 r_mcbond_it 6.644 r_dihedral_angle_1_deg 4.964 r_mcbond_other 1.688 r_angle_refined_deg 1.125 r_angle_other_deg 0.625 r_nbd_refined 0.355 r_xyhbond_nbd_refined 0.222 r_nbtor_refined 0.207 r_nbd_other 0.193 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4562 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement PHENIX phasing