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Aminoalkylpyrimidine Inhibitor Complexes with JAK2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN-HOUSE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.962 α = 84.02 b = 76.284 β = 66.87 c = 87.742 γ = 63.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC CCD 2006-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-3 SSRL BL11-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 80.9 100 0.12 8.7 3.03 59243 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.7 2.1 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN-HOUSE STRUCTURE 1.9 41.24 59243 5357 93.51 0.3443 0.34358 0.3385 0.35855 0.3541 RANDOM 24.344
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.178 r_dihedral_angle_3_deg 13.363 r_dihedral_angle_4_deg 10.772 r_dihedral_angle_1_deg 4.081 r_angle_refined_deg 0.878 r_nbtor_refined 0.293 r_mcangle_it 0.184 r_symmetry_vdw_refined 0.166 r_nbd_refined 0.144 r_scangle_it 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.178 r_dihedral_angle_3_deg 13.363 r_dihedral_angle_4_deg 10.772 r_dihedral_angle_1_deg 4.081 r_angle_refined_deg 0.878 r_nbtor_refined 0.293 r_mcangle_it 0.184 r_symmetry_vdw_refined 0.166 r_nbd_refined 0.144 r_scangle_it 0.134 r_mcbond_it 0.102 r_symmetry_hbond_refined 0.098 r_xyhbond_nbd_refined 0.088 r_scbond_it 0.082 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9516 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing