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Structure of a putative epoxide hydrolase t131d mutant from Pseudomonas aeruginosa.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4B9A PDB ENTRY 4B9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M LI2SO4, 1.25 M (NH4)2SO4, 0.1 M TRISCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 3.67 66.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.88 α = 90 b = 83.88 β = 90 c = 140.72 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2012-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 72.06 100 0.13 10.8 7.7 123442 2 8.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 100 0.95 2.1 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4B9A 1.3 23.37 117206 6193 99.97 0.12269 0.12163 0.14268 0.1527 RANDOM 14.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.23
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.664 r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 18.947 r_dihedral_angle_3_deg 11.359 r_sphericity_bonded 11.285 r_dihedral_angle_1_deg 5.186 r_rigid_bond_restr 3.692 r_angle_refined_deg 1.659 r_angle_other_deg 0.999 r_symmetry_vdw_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.664 r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 18.947 r_dihedral_angle_3_deg 11.359 r_sphericity_bonded 11.285 r_dihedral_angle_1_deg 5.186 r_rigid_bond_restr 3.692 r_angle_refined_deg 1.659 r_angle_other_deg 0.999 r_symmetry_vdw_refined 0.293 r_nbd_refined 0.275 r_xyhbond_nbd_refined 0.235 r_nbd_other 0.233 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.163 r_xyhbond_nbd_other 0.159 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.109 r_chiral_restr 0.107 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2335 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing