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Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 1)
Crystallization Crystal Properties Matthews coefficient Solvent content 1.97 37.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.789 α = 90 b = 67.789 β = 90 c = 125.165 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 33.8 100 0.11 6.3 20280 2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION OTHER NONE 2.005 33.895 1.35 20280 2065 99.96 0.1825 0.1776 0.1746 0.2268 0.2273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6062 -1.6062 3.2124
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.095 f_angle_d 0.6 f_chiral_restr 0.038 f_bond_d 0.004 f_plane_restr 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2072 Nucleic Acid Atoms 437 Solvent Atoms 326 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement