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Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ARW PDB ENTRY 4ARW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 4% PEG 6000, 0.1 M MES PH 6, 0.05 M MGCL2, 0.1 M NA BR, 1% BETA-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.56 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.09 α = 90 b = 154.4 β = 92.39 c = 134.54 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 MIRRORS 2012-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 31.44 97.7 0.07 12.9 3.1 79243 2 25.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 79 0.48 2.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ARW 2.055 31.443 75264 3979 97.713 0.214 0.2122 0.2176 0.2469 0.2509 RANDOM 35.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.457 -0.371 -0.116 -0.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.063 r_dihedral_angle_4_deg 15.812 r_dihedral_angle_3_deg 15.011 r_scbond_it 6.196 r_dihedral_angle_1_deg 6.012 r_scangle_it 5.378 r_mcangle_it 3.871 r_mcbond_it 2.622 r_angle_refined_deg 1.345 r_angle_other_deg 1.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.063 r_dihedral_angle_4_deg 15.812 r_dihedral_angle_3_deg 15.011 r_scbond_it 6.196 r_dihedral_angle_1_deg 6.012 r_scangle_it 5.378 r_mcangle_it 3.871 r_mcbond_it 2.622 r_angle_refined_deg 1.345 r_angle_other_deg 1.254 r_mcbond_other 0.73 r_nbd_refined 0.212 r_nbtor_refined 0.176 r_nbd_other 0.154 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9157 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing