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Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ARW PDB ENTRY 4ARW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 4% PEG 6000, 0.1 M MES PH 6, 0.05 M MGCL2, 0.1 M NA BR, 1% BETA-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.56 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.21 α = 90 b = 154.58 β = 92.05 c = 134.03 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 45.13 91.1 0.04 14.9 3.3 118780 1.5 27.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 98.8 0.68 1.7 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ARW 1.8 45.129 103188 5140 85.628 0.22 0.2181 0.2615 0.2732 RANDOM 35.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.492 -0.603 -0.188 -0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.558 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_4_deg 13.756 r_dihedral_angle_1_deg 5.969 r_scangle_it 5.495 r_scbond_it 5.113 r_mcangle_it 3.051 r_mcbond_it 1.944 r_angle_refined_deg 1.476 r_angle_other_deg 0.861
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.558 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_4_deg 13.756 r_dihedral_angle_1_deg 5.969 r_scangle_it 5.495 r_scbond_it 5.113 r_mcangle_it 3.051 r_mcbond_it 1.944 r_angle_refined_deg 1.476 r_angle_other_deg 0.861 r_mcbond_other 0.475 r_nbd_refined 0.212 r_nbtor_refined 0.176 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.12 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_xyhbond_nbd_other 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9282 Nucleic Acid Atoms Solvent Atoms 802 Heterogen Atoms 152
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing