X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4AZZPDB ENTRY 4AZZ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
11.6-2.2 M AMMONIUM SULFATE, 1.4 - 2.4 M NACL, 5-6 MM LEVAN TRIOSE
Crystal Properties
Matthews coefficientSolvent content
2.5151

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.897α = 90
b = 36.909β = 90.61
c = 87.355γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2011-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I24DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.143.6791.20.0512.53.31580322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1655.40.3722.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4AZZ1.187.35150129788791.070.157590.156350.18121RANDOM9.975
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.52-0.47-1.030.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.156
r_sphericity_free28.887
r_dihedral_angle_4_deg14.795
r_dihedral_angle_3_deg11.431
r_sphericity_bonded10.399
r_dihedral_angle_1_deg7.964
r_rigid_bond_restr2.995
r_angle_refined_deg1.909
r_angle_other_deg0.885
r_chiral_restr0.198
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.156
r_sphericity_free28.887
r_dihedral_angle_4_deg14.795
r_dihedral_angle_3_deg11.431
r_sphericity_bonded10.399
r_dihedral_angle_1_deg7.964
r_rigid_bond_restr2.995
r_angle_refined_deg1.909
r_angle_other_deg0.885
r_chiral_restr0.198
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3808
Nucleic Acid Atoms
Solvent Atoms469
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing