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Crystal structure of Human PS-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8
Crystal Properties Matthews coefficient Solvent content 4.1 69.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.742 α = 90 b = 76.742 β = 90 c = 123.401 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 58.53 96.9 0.04 16.9 3.1 89826 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.23 98.5 0.51 1.9 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.16 58.53 85370 4445 96.86 0.12231 0.12192 0.1353 0.12964 0.1444 RANDOM 15.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.04 -0.09 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.002 r_sphericity_free 31.353 r_dihedral_angle_4_deg 17.074 r_dihedral_angle_3_deg 13.37 r_sphericity_bonded 9.657 r_dihedral_angle_1_deg 4.216 r_rigid_bond_restr 3.651 r_angle_refined_deg 1.655 r_angle_other_deg 1.258 r_chiral_restr 0.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.002 r_sphericity_free 31.353 r_dihedral_angle_4_deg 17.074 r_dihedral_angle_3_deg 13.37 r_sphericity_bonded 9.657 r_dihedral_angle_1_deg 4.216 r_rigid_bond_restr 3.651 r_angle_refined_deg 1.655 r_angle_other_deg 1.258 r_chiral_restr 0.189 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1159 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing