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Mutations in the neighbourhood of CotA-laccase trinuclear site: E498L mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W6L PDB ENTRY 1W6L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 8% PEG 4K, 0.1M SODIUM CITRATE PH5.5, 30% ISOPROPANOL
Crystal Properties Matthews coefficient Solvent content 3.52 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.575 α = 90 b = 101.575 β = 90 c = 136.285 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50.8 99.5 0.05 5.5 89089 2.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.32 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W6L 1.7 40.72 84575 4462 99.24 0.17624 0.17532 0.1747 0.19375 0.1919 RANDOM 19.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.632 r_dihedral_angle_4_deg 18.25 r_dihedral_angle_3_deg 12.054 r_dihedral_angle_1_deg 6.151 r_scangle_it 1.884 r_scbond_it 1.18 r_angle_refined_deg 1.064 r_mcangle_it 0.795 r_mcbond_it 0.464 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.632 r_dihedral_angle_4_deg 18.25 r_dihedral_angle_3_deg 12.054 r_dihedral_angle_1_deg 6.151 r_scangle_it 1.884 r_scbond_it 1.18 r_angle_refined_deg 1.064 r_mcangle_it 0.795 r_mcbond_it 0.464 r_nbtor_refined 0.308 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.138 r_symmetry_hbond_refined 0.097 r_xyhbond_nbd_refined 0.091 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4082 Nucleic Acid Atoms Solvent Atoms 559 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing