☰ Navigation Tabs
C. elegans glucosamine-6-phosphate N-acetyltransferase (GNA1): coenzyme A adduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 MM ACCOA, GLCN-6-P, N-ACETYL-GLUCOSAMINE-6-PHOSPHATE, 0.1 M TRIS-HYDROCHLORIDE PH 8.5, 0.2 M SODIUM ACETATE TRIHYDRATE AND 30% (V/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.2 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.072 α = 90 b = 86.072 β = 90 c = 77.285 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 20 97.9 0.05 35.7 4.3 47107 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 83.7 0.28 3.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 14.99 43698 2326 97.75 0.17955 0.1777 0.1775 0.21383 0.2124 RANDOM 30.863
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.546 r_dihedral_angle_3_deg 13.98 r_dihedral_angle_4_deg 12.885 r_dihedral_angle_1_deg 6.531 r_angle_refined_deg 2.447 r_chiral_restr 0.161 r_bond_refined_d 0.023 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.546 r_dihedral_angle_3_deg 13.98 r_dihedral_angle_4_deg 12.885 r_dihedral_angle_1_deg 6.531 r_angle_refined_deg 2.447 r_chiral_restr 0.161 r_bond_refined_d 0.023 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2588 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling