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Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with dimethylbenzylammonium propane sulfonate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A80 PDB ENTRY 4A80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.98 37.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.72 α = 90 b = 55.69 β = 93.12 c = 38.03 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2010-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 37.97 87.9 0.06 15.6 3.5 7052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 93.7 0.14 8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A80 2.1 37.97 6705 331 87.41 0.1667 0.16254 0.1624 0.24906 0.2501 RANDOM 16.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.17 0.17 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.581 r_dihedral_angle_4_deg 29.233 r_dihedral_angle_3_deg 15.363 r_dihedral_angle_1_deg 6.251 r_scangle_it 4.528 r_scbond_it 2.776 r_mcangle_it 1.697 r_angle_refined_deg 1.681 r_mcbond_it 0.916 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.581 r_dihedral_angle_4_deg 29.233 r_dihedral_angle_3_deg 15.363 r_dihedral_angle_1_deg 6.251 r_scangle_it 4.528 r_scbond_it 2.776 r_mcangle_it 1.697 r_angle_refined_deg 1.681 r_mcbond_it 0.916 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.235 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1232 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing